AI-bioworkflow
成功
自然语言
可回放详情

Run 详情回放

run_b6bcb2831f8f

返回历史运行示例
创建时间
2026/07/13 15:17:10
更新时间
2026/07/13 15:17:36
完成时间
2026/07/13 15:17:36
运行类型
自然语言

Catalog Retrieval 回放

lexical_v1
approved catalog only

构建一个 bulk RNA-seq 差异表达分析工作流，输入多个样本的 paired-end FASTQ 文件。

direct match
Top recipe
rnaseq_differential_expression
score 33

Matched approved catalog recipe fields (name, aliases, description, required_inputs.description) using terms: rna, seq, bulk, fastq.

rna
seq
bulk
fastq
namealiasesdescriptionrequired_inputs.description
Top tools
salmon
v1.9.0
catalog-approved
score 17

Matched approved catalog tool fields (aliases, description, inputs.description) using terms: rna, seq, fastq.

rna
seq
fastq
aliasesdescriptioninputs.description
fastp
v1.3.3
catalog-approved
score 9

Matched approved catalog tool fields (aliases, description, inputs.description) using terms: fastq.

fastq
aliasesdescriptioninputs.description

请求内容

Natural-language request

Workflow IR 已保存
构建一个 bulk RNA-seq 差异表达分析工作流，输入多个样本的 paired-end FASTQ 文件。

诊断摘要

分析错误
0
分析警告
0
修复记录
0
校验状态
WDL valid

Workflow DAG

15 nodes
17 edges

基于 Workflow IR 的 inputs、steps、scatter 和 outputs 构建依赖图；该图展示编译时结构，不代表真实任务执行状态。

结构可用
Mini Map
React Flow

事件时间线

0 条事件

事件来自持久化 SSE envelope，可用于回放 run 的关键阶段。

已完成
暂无事件回放。

结构化产物

Recipe Tool Plan

Plan、Workflow IR、WDL 与诊断来自持久化 run snapshot。

{
  "workflow": {
    "inputs": {
      "raw_r1s": "Array[File]",
      "raw_r2s": "Array[File]",
      "sample_groups": "File",
      "sample_ids": "Array[String]",
      "transcriptome_index": "File",
      "tx2gene": "File"
    },
    "name": "rnaseq_differential_expression",
    "outputs": {
      "deg_table": "differential_expression.deg_table",
      "gene_counts": "summarize_transcripts.gene_counts",
      "multiqc_report": "qc_report.multiqc_report"
    },
    "recipe": "rnaseq_differential_expression",
    "tool_calls": [
      {
        "id": "qc",
        "inputs": {
          "r1": "raw_r1s[i]",
          "r2": "raw_r2s[i]"
        },
        "params": {},
        "step": "qc",
        "tool": "fastp",
        "version": "1.3.3"
      },
      {
        "id": "quantify",
        "inputs": {
          "index": "transcriptome_index",
          "r1": "qc.clean_r1",
          "r2": "qc.clean_r2"
        },
        "params": {
          "lib_type": "A",
          "thread": 8
        },
        "step": "quantify",
        "tool": "salmon",
        "version": "1.9.0"
      },
      {
        "id": "summarize_transcripts",
        "inputs": {
          "quant_files": "quantify.quant_file",
          "sample_ids": "sample_ids",
          "tx2gene": "tx2gene"
        },
        "params": {},
        "step": "summarize_transcripts",
        "tool": "tximport",
        "version": "1.30.0"
      },
      {
        "id": "differential_expression",
        "inputs": {
          "counts": "summarize_transcripts.gene_counts",
          "sample_groups": "sample_groups"
        },
        "params": {
          "contrast": "condition"
        },
        "step": "differential_expression",
        "tool": "deseq2",
        "version": "1.42.1"
      },
      {
        "id": "qc_report",
        "inputs": {
          "report_files": [
            "qc.html_report",
            "qc.json_report",
            "quantify.log_file"
          ]
        },
        "params": {},
        "step": "qc_report",
        "tool": "multiqc",
        "version": "1.21"
      }
    ]
  }
}